Marco Carbullido

Deep Learning Engineer · Computational Biologist · Software Developer

I am a developer and researcher with dual Bachelor’s degrees in Neuroscience and Computer Science from Tulane University. My work focuses on artificial intelligence, protein science, software engineering, and bioinformatics.

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Work

Selected projects and research experiences

Ultrastructural Analysis of Mitochondria and Neurons in the Ventral Nerve Cord

Built transformer-based instance segmentation pipelines for large-scale SEM volumes to analyze neuronal and mitochondrial structures in the Macleod Lab.

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Protein Epitope Prediction

Developed a bioinformatics pipeline integrating AlphaFold2 and transformer models for CD4+ T-cell epitope prediction in the Gragert Lab.

Improving risk stratification in kidney transplant outcomes by modeling antigen processing to inform prediction of T-cell epitopes derived from mismatched HLA proteins

Journal of Clinical and Translational Science. 2025, 9(s1):114-115.

DOI: 10.1017/cts.2024.995

Role: Co-Author

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Multimodal Lab Automation

Automated data curation and deployed multimodal deep learning models for large-scale animal behavior experiments at Tulane University.

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The Open Insulin Project

Lab intern supporting engineering of fermentation workflows and open-source protocols for low-cost insulin at Counter Culture Labs.

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Serch.io

AI job search that reads the details and ranks roles you can win. Serch.io enforces required qualifications, weighs your preferences, and explains every result. Set smart filters to control how strict you want to be—the shortlist updates instantly.

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